Tybased value represents a value that quantifies the expression of a gene below a distinctive experimental condition, even though the class ratio intensitybased value represents the ratio amongst the levels of expression of a gene beneath two various experimental circumstances. The class cD reads countingbased value specializes sequence countingbased worth. cD reads countingbased value represents a worth made by a RSeq experimental method (relationship created by) to quantify the expression of a gene. The classes absolute cD reads countingbased worth and relative cD reads countingbased worth specialize cD reads countingbased worth to represent that the value obtained from a RSeq experimental process might be based on the absolute number of cD reads or on a relative worth, respectively. Figure presents the concepts associated to a D MedChemExpress 
TA-02 microarray experimental method.Miyazaki et al. BMC Genomics, (Suppl ):S biomedcentral.comSSPage ofFigure D microarray experimental process. A med rectangle represents a concept. A white rectangle represents a idea introduced in our ontology, whilst a gray rectangle represents a concept 
reused from another ontology. A strong line with a stick arrowhead at its finish represents a partnership in between two concepts. A solid line with a hollow diamond at its end represents either a part of or even a has component relationship.The class D microarray experimental course of action represents a hybridizationbased experimental process aiming at quantifying the functiol productenerated by a gene as outcome of its expression. The classes microarray manufacturing, microarray washing, microarray image acquisition and microarray gene expression profilingrepresent unique subprocesses of a D microarray experiment. These subprocesses are linked towards the class D microarray experimental course of action via a part of relations, because they only order Tat-NR2B9c happen as part of a D microarray experimental procedure. The classes R extraction, reverse transcription, cD labeling andFigure RSeq experimental process. A med rectangle represents a idea. A white rectangle represents a idea introduced in our ontology, when a gray rectangle represents a idea reused from a different ontology. A strong line using a stick arrowhead at its finish represents a relationship in between two ideas. A strong line using a hollow diamond at its end represents either a part of or possibly a has aspect partnership.Miyazaki et al. BMC Genomics, (Suppl ):S biomedcentral.comSSPage ofhybridization also represent subprocesses of a D microarray experiment. Even so, these subprocesses are associated to the class D microarray experimental course of action by means of has element relations, considering that they’re able to also happen as part of other biological or experimental processes. The class microarray manufacturing represents the process of manufacturing a microarray chip with probes of interest (relationship has participant ). The class probe represents fragments of D made use of within the microarray manufacturing process. The PubMed ID:http://jpet.aspetjournals.org/content/117/4/488 class R extraction represents the method by which functiol R molecules (class mature transcript ) are extracted from cells or tissues of interest (partnership has participant ). The class reverse transcription represents the biological method by which a complementary D (cD) molecule is created (connection created by ) from a mature transcript (relationship has participant ). The class cD labeling represents the approach by which cD molecules (class cD) are labeled with fluorescent dyes (partnership has participant ). The class hy.Tybased value represents a value that quantifies the expression of a gene below a special experimental situation, whilst the class ratio intensitybased worth represents the ratio involving the levels of expression of a gene below two various experimental conditions. The class cD reads countingbased worth specializes sequence countingbased worth. cD reads countingbased worth represents a worth developed by a RSeq experimental method (partnership made by) to quantify the expression of a gene. The classes absolute cD reads countingbased value and relative cD reads countingbased value specialize cD reads countingbased value to represent that the worth obtained from a RSeq experimental course of action may perhaps be depending on the absolute number of cD reads or on a relative value, respectively. Figure presents the concepts associated to a D microarray experimental approach.Miyazaki et al. BMC Genomics, (Suppl ):S biomedcentral.comSSPage ofFigure D microarray experimental approach. A med rectangle represents a concept. A white rectangle represents a idea introduced in our ontology, when a gray rectangle represents a concept reused from an additional ontology. A strong line using a stick arrowhead at its finish represents a partnership involving two concepts. A solid line using a hollow diamond at its end represents either a a part of or even a has portion relationship.The class D microarray experimental approach represents a hybridizationbased experimental course of action aiming at quantifying the functiol productenerated by a gene as outcome of its expression. The classes microarray manufacturing, microarray washing, microarray image acquisition and microarray gene expression profilingrepresent different subprocesses of a D microarray experiment. These subprocesses are associated towards the class D microarray experimental course of action via part of relations, since they only happen as a part of a D microarray experimental course of action. The classes R extraction, reverse transcription, cD labeling andFigure RSeq experimental procedure. A med rectangle represents a concept. A white rectangle represents a concept introduced in our ontology, when a gray rectangle represents a notion reused from an additional ontology. A solid line using a stick arrowhead at its end represents a partnership among two concepts. A strong line with a hollow diamond at its end represents either a part of or perhaps a has portion connection.Miyazaki et al. BMC Genomics, (Suppl ):S biomedcentral.comSSPage ofhybridization also represent subprocesses of a D microarray experiment. Having said that, these subprocesses are connected for the class D microarray experimental approach through has part relations, because they can also happen as a part of other biological or experimental processes. The class microarray manufacturing represents the approach of manufacturing a microarray chip with probes of interest (partnership has participant ). The class probe represents fragments of D made use of in the microarray manufacturing method. The PubMed ID:http://jpet.aspetjournals.org/content/117/4/488 class R extraction represents the course of action by which functiol R molecules (class mature transcript ) are extracted from cells or tissues of interest (relationship has participant ). The class reverse transcription represents the biological procedure by which a complementary D (cD) molecule is created (connection produced by ) from a mature transcript (connection has participant ). The class cD labeling represents the approach by which cD molecules (class cD) are labeled with fluorescent dyes (relationship has participant ). The class hy.